UCR

Department of Botany & Plant Sciences



Genetics, Genomics & Bioinformatics


GGB

Genetics, Genomics, and Bioinformatics are undergoing an exciting and dynamic time. Plant Biology graduate students have access to state of the art facilities and world class faculty who are pushing the edge of these interlocking fields. Graduates from the Program typically continue a successful career path into research and/or teaching positions in both the private and public sectors. Some of the graduates from the Plant Biology Graduate Program are among the world's leaders in Plant Biology research.

Genetics investigates the organization, transmission and function of genetic information in cells, individuals and populations. Our program offers flexible training including basic and applied laboratory and field research in various genetic subdisciplines ranging from statistical genetics to cytogenetics to evolution to plant breeding and molecular genetics. The fields of genetics and genomics are gradually merging as the tools of genomics become available to answer key questions in fundamental genetics. Genomicists are experimental biologists who probe the structure, function, and interactions of cellular components on a large scale. Bioinformatics melds the disciplines of statistics, computer science and life sciences involving computationally-oriented researchers who develop data analysis methods to understand and make sense of the large datasets generated by genomicists and other biologists. Research of participating faculty spans both life and physical sciences and with projects focusing on both agricultural and natural systems.

 NAME/TITLE/CONTACTDISCIPLINE
Mary Lu Arpaia

ARPAIA, Mary Lu

CE Subtropical Horticulturist

mlarpaia@ucanr.edu

Cooperative Extension Specialist - Evaluation of preharvest and postharvest factors on subtropical crop productivity and fruit quality, including rootstocks, cultivar, irrigation, pesticide, and nutrition management strategies

Julia Bailey-Serres

BAILEY-SERRES, Julia N.

Professor of Genetics & Geneticist

serres@mail.ucr.edu

Gene Regulation; Translational Control; Abiotic Stress Signaling/Response; Low Oxygen Sensing; Flooding/Submergence
Xuemei Chen

CHEN, Xuemei

Professor of Plant Cell and Molecular Biology

xuemei.chen@ucr.edu

Cell fate specification and stem cell regulation in flower development; molecular mechanisms of microRNA metabolism and RNA silencing

Timothy Close

CLOSE, Timothy J.

Professor of Genetics & Geneticist

timothy.close@ucr.edu

Crop Plant Genomics and Bioinformatics; High Density Genetic Linkage Maps and Marker Assisted Selection; Barley, Citrus, Cowpea, Rice, Wheat; Abiotic and Biotic Stress Regulated Genes and Proteins; Application of Transcriptome Analyses to Biomarker Development for Citrus

Sean Cutler

CUTLER, Sean

Associate Professor of Plant Cell Biology

sean.cutler@ucr.edu

Chemical Genomics; Analysis and Exploitation of Natural Variation Using Small Molecules

Norman Ellstrand

ELLSTRAND, Norman C.

Professor of Genetics

norman.ellstrand@ucr.edu

Applied population genetics emphasizing gene flow and its role in evolution of invasiveness, extinction, and transgene dispersal.

Thomas Eulgem

EULGEM, Thomas A.

Associate Professor of Plant Cell Biology

thomas.eulgem@ucr.edu

Plant Immune Biology; Defense Signaling; Gene Regulation; Transcriptomics, Functional Genomics 

Thomas Girke

GIRKE, Thomas A.F.

Associate Professor of Bioinformatics

Bioinformatics; Cheminformatics; Drug informatics; Databases; Expression Data Analysis, Protein Function Predictions; Data Mining; Network Analysis and Systems Biology
Venugopala Reddy Gonehal

GONEHAL, Venugopala Reddy

Associate Professor of Plant Cell Biology

venug@ucr.edu

Gene Networks; Live Imaging; stem Cells; Development

Anthony Huang

HUANG, Anthony H.

Professor of Plant Physiology

anthony.huang@ucr.edu

Metabolism and cell and molecular biology of seed oils

Hailing Jin

JIN, Hailing

Professor and Molecular Geneticist (Cooperating Faculty Member)

hailing.jin@ucr.edu

Gene regulation and signal transduction of plant immunity
Isgouhi Kaloshian

KALOSHIAN, Isgouhi

Professor of Nematology (Cooperating Faculty Member)

isgouhi.kaloshian@ucr.edu

Plant-pest interactions; Resistance gene signaling and gene regulation; Pest effectors and transciptome analysis.

Adam Lukaszewski

LUKASZEWSKI, Adam J.

Professor of Genetics

adam.lukaszewski@ucr.edu

Cytogenetics of crop plants, Meiotic chromosome pairing

Alan McHughen

McHUGHEN, Alan

CE Plant Biotechnologist

alan.mchughen@ucr.edu

Cooperative Extension Specialist - Biotechnology for sustainable agriculture. Policy development and public education.

Natasha Raikhel

RAIKHEL, Natasha V.

Distinguished Professor of Plant Cell Biology

natasha.raikel@ucr.edu

Vacuolar Trafficking through the Secretory System; Biosynthesis of Cell Wall Polysaccharides in Plants

Mikeal Roose

ROOSE, Mikeal L. 

Department Chair & Professor of Genetics

mikeal.roose@ucr.edu

Genetics, genomics and breeding of citrus and asparagus; linkage mapping; marker assisted breeding; evolutionary relationships of cultivated citrus.

Joel Sachs

SACHS, Joel L.

Associate Professor of Biology (Cooperating Faculty Member)

joel.sachs@ucr.edu

Investigate the forces that shape bacterial cooperation with hosts as well as the origins and evolution of harmful strains. Current focus is on rhizobial bacteria that live in soils throughout the world and nodulate the roots of many legume hosts.
Patricia Springer

SPRINGER, Patricia S.

Associate Professor of Genetics

patricia.springer@ucr.edu

Plant developmental biology; Regulation of gene expression;  Genetic mechanisms that regulate leaf initiation and patterning.
Jason Stajich

STAJICH, Jason

Assistant Professor & Assistant Bioinformaticist (Cooperating Faculty Member)

jason.stajich@ucr.edu

We are interested in the set of genes that are required to synthesize, maintain, and remodel the cell wall as part of growth, response to stress, and developmental programs.

J. Giles Waines

WAINES, J. Giles

Professor of Genetics

giles.waines@ucr.edu

Root genetics, plant genetics, evolution, plant breeding, components of yield, wheat and legumes.

Linda Walling

WALLING, Linda

Professor of Genetics

linda.walling@ucr.edu

Mechanisms of resistance to whiteflies in alfalfa, cassava, and Arabidopsis. Role of plastid-localized leucine aminopeptidase in regulation nuclear gene expression after injury and herbivory.

Susan Wessler

WESSLER, Susan R.

Distingished Professor of Genetics

susan.wessler@ucr.edu

Transposable elements in plants with a focus on the characterization of active transposable elements and a determination of how they contribute to genome evolution and adaptation.

   

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E-mail: Laura.mcgeehan@ucr.edu

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